Get and Set Contrast Matrix Column Names
contr_colnames.Rd
Set and view the column names of contrasts associated with a factor.
Details
contr_colnames()
returns the current column names of the contrasts for a factor.
contr_colnames()<-
sets the column names of the contrasts for a factor.
cntr_pfx()<-
prefixes the current column names of the contrasts for a factor with the character or string
provided. This can be useful when factor levels are elided with the factor name as, for instance, in the printed
output of summary.glm
.
If contrasts are not set for x, both contr_colnames()<-
and cntr_pfx()<-
set the contrast attribute
using the default function from options("contrasts")
before modifying the column names.
See also
contrast
, contrasts
and factor
.
Other contrast-names:
helm_names()
Examples
(d <- data.frame(
f = gl(5, 5, labels = LETTERS[1:5]),
dv = sample(c(0,1), 25, replace = TRUE)
))
#> f dv
#> 1 A 1
#> 2 A 0
#> 3 A 1
#> 4 A 1
#> 5 A 1
#> 6 B 1
#> 7 B 0
#> 8 B 0
#> 9 B 0
#> 10 B 1
#> 11 C 0
#> 12 C 0
#> 13 C 1
#> 14 C 0
#> 15 C 1
#> 16 D 1
#> 17 D 1
#> 18 D 1
#> 19 D 1
#> 20 D 0
#> 21 E 1
#> 22 E 0
#> 23 E 1
#> 24 E 1
#> 25 E 0
contrasts(d$f) <- contr.helmert
contrasts(d$f)
#> [,1] [,2] [,3] [,4]
#> A -1 -1 -1 -1
#> B 1 -1 -1 -1
#> C 0 2 -1 -1
#> D 0 0 3 -1
#> E 0 0 0 4
contr_colnames(d$f)
#> NULL
glm(dv ~ f, family = binomial, data = d) |> summary()
#>
#> Call:
#> glm(formula = dv ~ f, family = binomial, data = d)
#>
#> Coefficients:
#> Estimate Std. Error z value Pr(>|z|)
#> (Intercept) 0.47342 0.44721 1.059 0.290
#> f1 -0.89588 0.72169 -1.241 0.214
#> f2 -0.29863 0.38790 -0.770 0.441
#> f3 0.29863 0.31366 0.952 0.341
#> f4 -0.01699 0.20916 -0.081 0.935
#>
#> (Dispersion parameter for binomial family taken to be 1)
#>
#> Null deviance: 33.651 on 24 degrees of freedom
#> Residual deviance: 30.198 on 20 degrees of freedom
#> AIC: 40.198
#>
#> Number of Fisher Scoring iterations: 4
#>
contr_colnames(d$f) <- c("A v. B", "AB v. C", "ABC v. D", "ABCD v. E")
contr_colnames(d$f)
#> [1] "A v. B" "AB v. C" "ABC v. D" "ABCD v. E"
contrasts(d$f)
#> A v. B AB v. C ABC v. D ABCD v. E
#> A -1 -1 -1 -1
#> B 1 -1 -1 -1
#> C 0 2 -1 -1
#> D 0 0 3 -1
#> E 0 0 0 4
glm(dv ~ f, family = binomial, data = d) |> summary()
#>
#> Call:
#> glm(formula = dv ~ f, family = binomial, data = d)
#>
#> Coefficients:
#> Estimate Std. Error z value Pr(>|z|)
#> (Intercept) 0.47342 0.44721 1.059 0.290
#> fA v. B -0.89588 0.72169 -1.241 0.214
#> fAB v. C -0.29863 0.38790 -0.770 0.441
#> fABC v. D 0.29863 0.31366 0.952 0.341
#> fABCD v. E -0.01699 0.20916 -0.081 0.935
#>
#> (Dispersion parameter for binomial family taken to be 1)
#>
#> Null deviance: 33.651 on 24 degrees of freedom
#> Residual deviance: 30.198 on 20 degrees of freedom
#> AIC: 40.198
#>
#> Number of Fisher Scoring iterations: 4
#>
contr_colpfx(d$f) <- ": "
contr_colnames(d$f)
#> [1] ": A v. B" ": AB v. C" ": ABC v. D" ": ABCD v. E"
glm(dv ~ f, family = binomial, data = d) |> summary()
#>
#> Call:
#> glm(formula = dv ~ f, family = binomial, data = d)
#>
#> Coefficients:
#> Estimate Std. Error z value Pr(>|z|)
#> (Intercept) 0.47342 0.44721 1.059 0.290
#> f: A v. B -0.89588 0.72169 -1.241 0.214
#> f: AB v. C -0.29863 0.38790 -0.770 0.441
#> f: ABC v. D 0.29863 0.31366 0.952 0.341
#> f: ABCD v. E -0.01699 0.20916 -0.081 0.935
#>
#> (Dispersion parameter for binomial family taken to be 1)
#>
#> Null deviance: 33.651 on 24 degrees of freedom
#> Residual deviance: 30.198 on 20 degrees of freedom
#> AIC: 40.198
#>
#> Number of Fisher Scoring iterations: 4
#>
rm(d)